1 Response_reg#1
5-117 aa · 113 aa · 64.9% of protein
Raw token
Response_reg:5:7.05e-22:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV07_RS17645
Response regulator, CheY family
Clostridioides difficile · GCF_002302845
ClassRRTypeCheYLength174 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302845#BGV07_RS17645Stable P2CS identifier used across views.
GenomeGCF_002302845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length174 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 174 aa (64.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa174 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:7.05e-22:117:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302845::NZ_MPGC01000245.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV07_17430RefSeq proteinWP_095920834.1
Context group ID
GCF_002302845::NZ_MPGC01000245.1::G00050Context members
BGV07_RS17645BGV07_RS17650
Partner locus tags
BGV07_RS17645BGV07_RS17650
Partner old locus tags
BGV07_17430BGV07_17435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095920834.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV07_RS17645Primary locus identifier stored in the genes table.
Old locus tagBGV07_17430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGC01000245.1Sequence record reported by the local genomic context database.
Genomic interval1-523 nt523 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-2 142 ntGCF_002302845::NZ_MPGC01000245.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302845::NZ_MPGC01000245.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGC01000245.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 142 nt2 142 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV07_RS17645GCF_002302845#BGV07_RS17645
RRCheYCurrent focus
1-523 nt · Reverse (-)
BGV07_RS17650GCF_002302845#BGV07_RS17650
HKClassic
637-2 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS11900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1059373
Simplified PFAM architecture for RROC_1059373
PFAM domain coverage: 189 / 234 aa (80.8%)
1 aa234 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-227]
- Domain count: 2
- Matched identifier: RROC_1059373
- Positioned domains: Response_reg 5-116 ; HTH_18 151-227
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS11900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302845
AssemblyASM230284v1 · Contighaploid
Genome composition4 071 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key