1 Response_reg#1
7-107 aa · 101 aa · 45.3% of protein
Raw token
Response_reg:7:4.65e-21:107:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV07_RS16550
Response regulator OmpR family
Clostridioides difficile · GCF_002302845
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302845#BGV07_RS16550Stable P2CS identifier used across views.
GenomeGCF_002302845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 223 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:144:1.11e-23:219:77:77- Raw architecture: Response_reg:7:4.65e-21:107:102:111#Trans_reg_C:144:1.11e-23:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302845::NZ_MPGC01000198.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4714-6399Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV07_16355RefSeq proteinWP_095920804.1
Context group ID
GCF_002302845::NZ_MPGC01000198.1::G00045Context members
BGV07_RS16545BGV07_RS16550
Partner locus tags
BGV07_RS16545BGV07_RS16550
Partner old locus tags
BGV07_16350BGV07_16355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095920804.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV07_RS16550Primary locus identifier stored in the genes table.
Old locus tagBGV07_16355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGC01000198.1Sequence record reported by the local genomic context database.
Genomic interval5 728-6 399 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 714-6 399 ntGCF_002302845::NZ_MPGC01000198.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302845::NZ_MPGC01000198.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGC01000198.1All displayed genes belong to this local TCS context.
Neighborhood span4 714-6 399 nt1 686 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 714 nt6 399 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV07_RS16545GCF_002302845#BGV07_RS16545
HKClassic
4 714-5 487 nt · Reverse (-)
BGV07_RS16550GCF_002302845#BGV07_RS16550
RROmpRCurrent focus
5 728-6 399 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302845#BGV07_RS16550The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1597090
Simplified PFAM architecture for RROC_1597090
PFAM domain coverage: 176 / 223 aa (78.9%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-106] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1597090
- Positioned domains: Response_reg 7-106 ; Response_reg 7-106 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_002302845#BGV07_RS16550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302845
AssemblyASM230284v1 · Contighaploid
Genome composition4 071 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key