1 HisKA#1
63-123 aa · 61 aa · 21.9% of protein
Raw token
HisKA:63:0.00000998:123:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV06_RS17225
Histidine kinase, Classic
Clostridioides difficile · GCF_002302835
ClassHKTypeClassicLength279 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302835#BGV06_RS17225Stable P2CS identifier used across views.
GenomeGCF_002302835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length279 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 279 aa (60.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa279 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
169-276 aa · 108 aa · 38.7% of protein
Raw token
HATPase_c:169:5.53e-26:276:108:109- Raw architecture: HisKA:63:0.00000998:123:63:64#HATPase_c:169:5.53e-26:276:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302835::NZ_MPFJ01000064.1::G00055
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18667-19506Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV06_17080RefSeq proteinWP_095890147.1
Context group ID
GCF_002302835::NZ_MPFJ01000064.1::G00055Context members
BGV06_RS17225
Partner locus tags
BGV06_RS17225
Partner old locus tags
BGV06_17080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095890147.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV06_RS17225Primary locus identifier stored in the genes table.
Old locus tagBGV06_17080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFJ01000064.1Sequence record reported by the local genomic context database.
Genomic interval18 667-19 506 nt840 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 667-19 506 ntGCF_002302835::NZ_MPFJ01000064.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302835::NZ_MPFJ01000064.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFJ01000064.1All displayed genes belong to this local TCS context.
Neighborhood span18 667-19 506 nt840 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 667 nt19 506 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV06_RS17225GCF_002302835#BGV06_RS17225
HKClassicCurrent focus
18 667-19 506 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS08375Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849747
Simplified PFAM architecture for HKOC_2849747
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2849747
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS08375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302835
AssemblyASM230283v1 · Contighaploid
Genome composition4 254 784 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key