1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:3.93e-29:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV06_RS00645
Response regulator OmpR family
Clostridioides difficile · GCF_002302835
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302835#BGV06_RS00645Stable P2CS identifier used across views.
GenomeGCF_002302835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:2.43e-30:232:78:77- Raw architecture: Response_reg:12:3.93e-29:120:110:111#Trans_reg_C:155:2.43e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302835::NZ_MPFJ01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133929-135885Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV06_00640RefSeq proteinWP_330401071.1
Context group ID
GCF_002302835::NZ_MPFJ01000001.1::G00002Context members
BGV06_RS00645BGV06_RS00650
Partner locus tags
BGV06_RS00645BGV06_RS00650
Partner old locus tags
BGV06_00640BGV06_00645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330401071.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV06_RS00645Primary locus identifier stored in the genes table.
Old locus tagBGV06_00640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval133 929-134 654 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span133 929-135 885 ntGCF_002302835::NZ_MPFJ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302835::NZ_MPFJ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span133 929-135 885 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 929 nt135 885 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV06_RS00645GCF_002302835#BGV06_RS00645
RROmpRCurrent focus
133 929-134 654 nt · Forward (+)
BGV06_RS00650GCF_002302835#BGV06_RS00650
HKClassic
134 632-135 885 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302835#BGV06_RS00645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0866543
Simplified PFAM architecture for RROC_0866543
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0866543
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_002302835#BGV06_RS00645
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_002302835#BGV06_RS00645 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302835
AssemblyASM230283v1 · Contighaploid
Genome composition4 254 784 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key