1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000911:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV01_RS00390
Histidine kinase, Classic
Clostridioides difficile · GCF_002302765
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_002302765#BGV01_RS00390Stable P2CS identifier used across views.
GenomeGCF_002302765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:2.91e-30:668:104:109- Raw architecture: HisKA:449:0.00000000911:514:66:64#HATPase_c:565:2.91e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_002302765::NZ_MPFE01000001.1::G00003
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span80904-86629Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV01_00385RefSeq proteinWP_009893921.1
Context group ID
GCF_002302765::NZ_MPFE01000001.1::G00003Context members
BGV01_RS00385BGV01_RS00390BGV01_RS00395BGV01_RS00400BGV01_RS00405
Partner locus tags
BGV01_RS00385BGV01_RS00390BGV01_RS00395BGV01_RS00400BGV01_RS00405
Partner old locus tags
BGV01_00380BGV01_00385BGV01_00390BGV01_00395BGV01_00400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009893921.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3NB90Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3NB90_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV01_RS00390Primary locus identifier stored in the genes table.
Old locus tagBGV01_00385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFE01000001.1Sequence record reported by the local genomic context database.
Genomic interval81 653-83 668 nt2 016 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 904-86 629 ntGCF_002302765::NZ_MPFE01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302765::NZ_MPFE01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span80 904-86 629 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 904 nt86 629 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
BGV01_RS00385GCF_002302765#BGV01_RS00385
RROmpR
80 904-81 581 nt · Forward (+)
BGV01_RS00390GCF_002302765#BGV01_RS00390
HKClassicCurrent focus
81 653-83 668 nt · Forward (+)
BGV01_RS00395GCF_002302765#BGV01_RS00395
RROmpR
83 718-84 398 nt · Forward (+)
BGV01_RS00400GCF_002302765#BGV01_RS00400
RROmpR
84 780-85 478 nt · Forward (+)
BGV01_RS00405GCF_002302765#BGV01_RS00405
HKClassic
85 514-86 629 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216530Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842418
Simplified PFAM architecture for HKOC_0842418
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842418
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302765
AssemblyASM230276v1 · Contighaploid
Genome composition4 140 686 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key