1 Response_reg#1
4-108 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:4:1.34e-21:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV00_RS02155
Response regulator LytTR family
Clostridioides difficile · GCF_002302755
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302755#BGV00_RS02155Stable P2CS identifier used across views.
GenomeGCF_002302755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 236 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:6.33e-19:227:93:98- Raw architecture: Response_reg:4:1.34e-21:108:108:111#LytTR:141:6.33e-19:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302755::NZ_MPEL01000002.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span153421-154131Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV00_02160RefSeq proteinWP_095903634.1
Context group ID
GCF_002302755::NZ_MPEL01000002.1::G00010Context members
BGV00_RS02155
Partner locus tags
BGV00_RS02155
Partner old locus tags
BGV00_02160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095903634.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV00_RS02155Primary locus identifier stored in the genes table.
Old locus tagBGV00_02160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPEL01000002.1Sequence record reported by the local genomic context database.
Genomic interval153 421-154 131 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span153 421-154 131 ntGCF_002302755::NZ_MPEL01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302755::NZ_MPEL01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPEL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span153 421-154 131 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 421 nt154 131 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV00_RS02155GCF_002302755#BGV00_RS02155
RRLytTRCurrent focus
153 421-154 131 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302755#BGV00_RS02155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0993908
Simplified PFAM architecture for RROC_0993908
PFAM domain coverage: 194 / 236 aa (82.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-110] | LytTR[141-227]
- Domain count: 2
- Matched identifier: RROC_0993908
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; LytTR 141-227 ; LytTR 141-227
Cluster members and taxonomy
Representative gene: GCF_002302755#BGV00_RS02155
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_002302755#BGV00_RS02155 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302755
AssemblyASM230275v1 · Contighaploid
Genome composition4 418 761 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key