1 HisKA#1
235-295 aa · 61 aa · 13.4% of protein
Raw token
HisKA:235:0.000000000000315:295:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU90_RS17240
Histidine kinase, Classic
Clostridioides difficile · GCF_002302585
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302585#BGU90_RS17240Stable P2CS identifier used across views.
GenomeGCF_002302585Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 454 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-453 aa · 110 aa · 24.2% of protein
Raw token
HATPase_c:344:1.41e-20:453:110:109- Raw architecture: HisKA:235:0.000000000000315:295:61:64#HATPase_c:344:1.41e-20:453:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302585::NZ_MPGB01000116.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2499-4513Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU90_17115RefSeq proteinWP_095916057.1
Context group ID
GCF_002302585::NZ_MPGB01000116.1::G00052Context members
BGU90_RS17240BGU90_RS17245
Partner locus tags
BGU90_RS17240BGU90_RS17245
Partner old locus tags
BGU90_17115BGU90_17120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095916057.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU90_RS17240Primary locus identifier stored in the genes table.
Old locus tagBGU90_17115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGB01000116.1Sequence record reported by the local genomic context database.
Genomic interval2 499-3 863 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 499-4 513 ntGCF_002302585::NZ_MPGB01000116.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302585::NZ_MPGB01000116.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGB01000116.1All displayed genes belong to this local TCS context.
Neighborhood span2 499-4 513 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 499 nt4 513 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU90_RS17240GCF_002302585#BGU90_RS17240
HKClassicCurrent focus
2 499-3 863 nt · Reverse (-)
BGU90_RS17245GCF_002302585#BGU90_RS17245
RROmpR
3 854-4 513 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302585#BGU90_RS17240The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1914331
Simplified PFAM architecture for HKOC_1914331
PFAM domain coverage: 171 / 454 aa (37.7%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-296] | HATPase_c[345-453]
- Domain count: 2
- Matched identifier: HKOC_1914331
- Positioned domains: HisKA 235-296 ; HATPase_c 345-453
Cluster members and taxonomy
Representative gene: GCF_002302585#BGU90_RS17240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302585
AssemblyASM230258v1 · Contighaploid
Genome composition4 183 291 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key