1 HisKA#1
16-69 aa · 54 aa · 23.6% of protein
Raw token
HisKA:16:0.00000126:69:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU97_RS19510
Histidine kinase, Classic
Clostridioides difficile · GCF_002302225
ClassHKTypeClassicLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302225#BGU97_RS19510Stable P2CS identifier used across views.
GenomeGCF_002302225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 229 aa (72.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
115-225 aa · 111 aa · 48.5% of protein
Raw token
HATPase_c:115:2.09e-21:225:111:109- Raw architecture: HisKA:16:0.00000126:69:60:64#HATPase_c:115:2.09e-21:225:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302225::NZ_MPFC01000308.1::G00050
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5537-6228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU97_16530RefSeq proteinWP_207653260.1
Context group ID
GCF_002302225::NZ_MPFC01000308.1::G00050Context members
BGU97_RS19510
Partner locus tags
BGU97_RS19510
Partner old locus tags
BGU97_16530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207653260.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU97_RS19510Primary locus identifier stored in the genes table.
Old locus tagBGU97_16530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFC01000308.1Sequence record reported by the local genomic context database.
Genomic interval5 537-6 228 nt692 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 537-6 228 ntGCF_002302225::NZ_MPFC01000308.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302225::NZ_MPFC01000308.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFC01000308.1All displayed genes belong to this local TCS context.
Neighborhood span5 537-6 228 nt692 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 537 nt6 228 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU97_RS19510GCF_002302225#BGU97_RS19510
HKClassicCurrent focus
5 537-6 228 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS03220Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2848168
Simplified PFAM architecture for HKOC_2848168
PFAM domain coverage: 110 / 335 aa (32.8%)
1 aa335 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-330]
- Domain count: 1
- Matched identifier: HKOC_2848168
- Positioned domains: HATPase_c 221-330
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS03220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302225
AssemblyASM230222v1 · Contighaploid
Genome composition4 041 000 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key