1 Response_reg#1
21-127 aa · 107 aa · 42.6% of protein
Raw token
Response_reg:21:3.12e-18:127:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU97_RS00365
Response regulator LytTR family
Clostridioides difficile · GCF_002302225
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302225#BGU97_RS00365Stable P2CS identifier used across views.
GenomeGCF_002302225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 251 aa (77.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 LytTR#2
156-242 aa · 87 aa · 34.7% of protein
Raw token
LytTR:156:1.59e-18:242:93:98- Raw architecture: Response_reg:21:3.12e-18:127:110:111#LytTR:156:1.59e-18:242:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302225::NZ_MPFC01000053.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-758Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU97_00360RefSeq proteinWP_272865121.1
Context group ID
GCF_002302225::NZ_MPFC01000053.1::G00001Context members
BGU97_RS00365
Partner locus tags
BGU97_RS00365
Partner old locus tags
BGU97_00360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_272865121.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU97_RS00365Primary locus identifier stored in the genes table.
Old locus tagBGU97_00360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFC01000053.1Sequence record reported by the local genomic context database.
Genomic interval1-758 nt758 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-758 ntGCF_002302225::NZ_MPFC01000053.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302225::NZ_MPFC01000053.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFC01000053.1All displayed genes belong to this local TCS context.
Neighborhood span1-758 nt758 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt758 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU97_RS00365GCF_002302225#BGU97_RS00365
RRLytTRCurrent focus
1-758 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302225#BGU97_RS00365The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0713295
Simplified PFAM architecture for RROC_0713295
PFAM domain coverage: 197 / 251 aa (78.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[21-131] | LytTR[156-241]
- Domain count: 2
- Matched identifier: RROC_0713295
- Positioned domains: Response_reg 21-131 ; Response_reg 21-131 ; LytTR 156-241 ; LytTR 156-241
Cluster members and taxonomy
Representative gene: GCF_002302225#BGU97_RS00365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302225
AssemblyASM230222v1 · Contighaploid
Genome composition4 041 000 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key