1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:2.16e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU92_RS14595
Response regulator OmpR family
Clostridioides difficile · GCF_002302165
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302165#BGU92_RS14595Stable P2CS identifier used across views.
GenomeGCF_002302165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:149:9.9e-29:224:76:77- Raw architecture: Response_reg:4:2.16e-34:113:111:111#Trans_reg_C:149:9.9e-29:224:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302165::NZ_MPEY01000016.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62544-64482Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU92_14475RefSeq proteinWP_009895237.1
Context group ID
GCF_002302165::NZ_MPEY01000016.1::G00051Context members
BGU92_RS14595BGU92_RS14600
Partner locus tags
BGU92_RS14595BGU92_RS14600
Partner old locus tags
BGU92_14475BGU92_14480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009895237.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU92_RS14595Primary locus identifier stored in the genes table.
Old locus tagBGU92_14475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPEY01000016.1Sequence record reported by the local genomic context database.
Genomic interval62 544-63 230 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 544-64 482 ntGCF_002302165::NZ_MPEY01000016.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302165::NZ_MPEY01000016.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPEY01000016.1All displayed genes belong to this local TCS context.
Neighborhood span62 544-64 482 nt1 939 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 544 nt64 482 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU92_RS14595GCF_002302165#BGU92_RS14595
RROmpRCurrent focus
62 544-63 230 nt · Forward (+)
BGU92_RS14600GCF_002302165#BGU92_RS14600
HKClassic
63 241-64 482 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0203225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302095
Simplified PFAM architecture for RROC_1302095
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1302095
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-223 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0203225
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 339 total members. Page 1 / 7.
GCF_000154625#QAB_RS0203225 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302165
AssemblyASM230216v1 · Contighaploid
Genome composition4 079 871 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key