1 HisKA#1
78-143 aa · 66 aa · 22.2% of protein
Raw token
HisKA:78:0.000000201:143:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU89_RS10265
Histidine kinase, Classic
Clostridioides difficile · GCF_002302125
ClassHKTypeClassicLength297 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302125#BGU89_RS10265Stable P2CS identifier used across views.
GenomeGCF_002302125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length297 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 297 aa (56.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa297 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
195-295 aa · 101 aa · 34.0% of protein
Raw token
HATPase_c:195:1.16e-24:295:101:109- Raw architecture: HisKA:78:0.000000201:143:66:64#HATPase_c:195:1.16e-24:295:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302125::NZ_MPEW01000302.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9111-10006Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU89_10160RefSeq proteinWP_095918035.1
Context group ID
GCF_002302125::NZ_MPEW01000302.1::G00032Context members
BGU89_RS10265
Partner locus tags
BGU89_RS10265
Partner old locus tags
BGU89_10160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095918035.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU89_RS10265Primary locus identifier stored in the genes table.
Old locus tagBGU89_10160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPEW01000302.1Sequence record reported by the local genomic context database.
Genomic interval9 111-10 006 nt896 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 111-10 006 ntGCF_002302125::NZ_MPEW01000302.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302125::NZ_MPEW01000302.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPEW01000302.1All displayed genes belong to this local TCS context.
Neighborhood span9 111-10 006 nt896 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 111 nt10 006 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU89_RS10265GCF_002302125#BGU89_RS10265
HKClassicCurrent focus
9 111-10 006 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS14125Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827842
Simplified PFAM architecture for HKOC_2827842
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2827842
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS14125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302125
AssemblyASM230212v1 · Contighaploid
Genome composition4 196 520 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key