1 PAS_8#1
519-556 aa · 38 aa · 4.2% of protein
Raw token
PAS_8:519:0.0000888:556:38:65P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU45_RS18715
Histidine kinase, Classic
Clostridioides difficile · GCF_002301985
ClassHKTypeClassicLength899 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002301985#BGU45_RS18715Stable P2CS identifier used across views.
GenomeGCF_002301985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_8HisKAHATPase_c
Protein length899 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 899 aa (24.7%)Merged over positioned domains only.
Domain description1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa899 aa
Domain-by-domain annotation3 items
2 HisKA#2
642-713 aa · 72 aa · 8.0% of protein
Raw token
HisKA:642:0.00000000208:713:72:643 HATPase_c#3
761-872 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:761:2.14e-25:872:112:109- Raw architecture: PAS_8:519:0.0000888:556:38:65#HisKA:642:0.00000000208:713:72:64#HATPase_c:761:2.14e-25:872:112:109
- Domain description: 1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002301985::NZ_MOQY01000164.1::G00053
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3-2702Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU45_18465RefSeq proteinWP_095916301.1
Context group ID
GCF_002301985::NZ_MOQY01000164.1::G00053Context members
BGU45_RS18715
Partner locus tags
BGU45_RS18715
Partner old locus tags
BGU45_18465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095916301.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU45_RS18715Primary locus identifier stored in the genes table.
Old locus tagBGU45_18465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQY01000164.1Sequence record reported by the local genomic context database.
Genomic interval3-2 702 nt2 700 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3-2 702 ntGCF_002301985::NZ_MOQY01000164.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301985::NZ_MOQY01000164.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQY01000164.1All displayed genes belong to this local TCS context.
Neighborhood span3-2 702 nt2 700 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 nt2 702 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU45_RS18715GCF_002301985#BGU45_RS18715
HKClassicCurrent focus
3-2 702 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301985#BGU45_RS18715The current gene is the representative for this cluster.
PFAM architecturePAS_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0407636
Simplified PFAM architecture for HKOC_0407636
PFAM domain coverage: 221 / 899 aa (24.6%)
1 aa899 aa
PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[519-559] | HisKA[643-711] | HATPase_c[761-871]
- Domain count: 3
- Matched identifier: HKOC_0407636
- Positioned domains: PAS_8 519-559 ; HisKA 643-711 ; HATPase_c 761-871
Cluster members and taxonomy
Representative gene: GCF_002301985#BGU45_RS18715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301985
AssemblyASM230198v1 · Contighaploid
Genome composition4 131 908 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key