1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:5.04e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU80_RS01025
Response regulator OmpR family
Clostridioides difficile · GCF_002301945
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_002301945#BGU80_RS01025Stable P2CS identifier used across views.
GenomeGCF_002301945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.96e-22:223:75:77- Raw architecture: Response_reg:5:5.04e-22:114:111:111#Trans_reg_C:150:2.96e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_002301945::NZ_MPEP01000001.1::G00004
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span227307-233032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU80_00995RefSeq proteinWP_009891737.1
Context group ID
GCF_002301945::NZ_MPEP01000001.1::G00004Context members
BGU80_RS01015BGU80_RS01020BGU80_RS01025BGU80_RS01030BGU80_RS01035
Partner locus tags
BGU80_RS01015BGU80_RS01020BGU80_RS01025BGU80_RS01030BGU80_RS01035
Partner old locus tags
BGU80_00985BGU80_00990BGU80_00995BGU80_01000BGU80_01005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891737.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N6A7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N6A7_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU80_RS01025Primary locus identifier stored in the genes table.
Old locus tagBGU80_00995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPEP01000001.1Sequence record reported by the local genomic context database.
Genomic interval229 538-230 218 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span227 307-233 032 ntGCF_002301945::NZ_MPEP01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301945::NZ_MPEP01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPEP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span227 307-233 032 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 307 nt233 032 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
BGU80_RS01015GCF_002301945#BGU80_RS01015
HKClassic
227 307-228 422 nt · Reverse (-)
BGU80_RS01020GCF_002301945#BGU80_RS01020
RROmpR
228 458-229 156 nt · Reverse (-)
BGU80_RS01025GCF_002301945#BGU80_RS01025
RROmpRCurrent focus
229 538-230 218 nt · Reverse (-)
BGU80_RS01030GCF_002301945#BGU80_RS01030
HKClassic
230 268-232 283 nt · Reverse (-)
BGU80_RS01035GCF_002301945#BGU80_RS01035
RROmpR
232 355-233 032 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407941
Simplified PFAM architecture for RROC_1407941
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407941
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301945
AssemblyASM230194v1 · Contighaploid
Genome composition4 160 499 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key