1 Response_reg#1
9-117 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:9:5.58e-32:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU50_RS11700
Response regulator OmpR family
Clostridioides difficile · GCF_002301905
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301905#BGU50_RS11700Stable P2CS identifier used across views.
GenomeGCF_002301905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.5% of protein
Raw token
Trans_reg_C:156:5.47e-29:231:76:77- Raw architecture: Response_reg:9:5.58e-32:117:111:111#Trans_reg_C:156:5.47e-29:231:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301905::NZ_MOQT01000016.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99185-101204Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU50_11575RefSeq proteinWP_070538245.1
Context group ID
GCF_002301905::NZ_MOQT01000016.1::G00037Context members
BGU50_RS11700BGU50_RS11705
Partner locus tags
BGU50_RS11700BGU50_RS11705
Partner old locus tags
BGU50_11575BGU50_11580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070538245.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU50_RS11700Primary locus identifier stored in the genes table.
Old locus tagBGU50_11575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQT01000016.1Sequence record reported by the local genomic context database.
Genomic interval99 185-99 889 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span99 185-101 204 ntGCF_002301905::NZ_MOQT01000016.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301905::NZ_MOQT01000016.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQT01000016.1All displayed genes belong to this local TCS context.
Neighborhood span99 185-101 204 nt2 020 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 185 nt101 204 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU50_RS11700GCF_002301905#BGU50_RS11700
RROmpRCurrent focus
99 185-99 889 nt · Forward (+)
BGU50_RS11705GCF_002301905#BGU50_RS11705
HKClassic
99 882-101 204 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301905#BGU50_RS11700The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053638
Simplified PFAM architecture for RROC_1053638
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1053638
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_002301905#BGU50_RS11700
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 44 over 44 total members. Page 1 / 1.
GCF_002301905#BGU50_RS11700 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301905
AssemblyASM230190v1 · Contighaploid
Genome composition4 142 854 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key