1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.09e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU50_RS04105
Response regulator OmpR family
Clostridioides difficile · GCF_002301905
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_002301905#BGU50_RS04105Stable P2CS identifier used across views.
GenomeGCF_002301905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.55e-22:223:75:77- Raw architecture: Response_reg:5:1.09e-23:114:111:111#Trans_reg_C:150:2.55e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_002301905::NZ_MOQT01000005.1::G00016
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span22727-26221Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU50_04050RefSeq proteinWP_096000392.1
Context group ID
GCF_002301905::NZ_MOQT01000005.1::G00016Context members
BGU50_RS04105BGU50_RS04110BGU50_RS04115
Partner locus tags
BGU50_RS04105BGU50_RS04110BGU50_RS04115
Partner old locus tags
BGU50_04050BGU50_04055BGU50_04060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_096000392.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU50_RS04105Primary locus identifier stored in the genes table.
Old locus tagBGU50_04050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQT01000005.1Sequence record reported by the local genomic context database.
Genomic interval22 727-23 407 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 727-26 221 ntGCF_002301905::NZ_MOQT01000005.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301905::NZ_MOQT01000005.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQT01000005.1All displayed genes belong to this local TCS context.
Neighborhood span22 727-26 221 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 727 nt26 221 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
BGU50_RS04105GCF_002301905#BGU50_RS04105
RROmpRCurrent focus
22 727-23 407 nt · Reverse (-)
BGU50_RS04110GCF_002301905#BGU50_RS04110
HKClassic
23 457-25 472 nt · Reverse (-)
BGU50_RS04115GCF_002301905#BGU50_RS04115
RROmpR
25 544-26 221 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301905#BGU50_RS04105The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1418407
Simplified PFAM architecture for RROC_1418407
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1418407
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_002301905#BGU50_RS04105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301905
AssemblyASM230190v1 · Contighaploid
Genome composition4 142 854 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key