1 Response_reg#1
5-117 aa · 113 aa · 48.7% of protein
Raw token
Response_reg:5:2.36e-22:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU50_RS03340
Response regulator, unclassified
Clostridioides difficile · GCF_002301905
ClassRRTypeunclassifiedLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301905#BGU50_RS03340Stable P2CS identifier used across views.
GenomeGCF_002301905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 232 aa (48.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:2.36e-22:117:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301905::NZ_MOQT01000004.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59475-61792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU50_03290RefSeq proteinWP_096000379.1
Context group ID
GCF_002301905::NZ_MOQT01000004.1::G00014Context members
BGU50_RS03340BGU50_RS03345
Partner locus tags
BGU50_RS03340BGU50_RS03345
Partner old locus tags
BGU50_03290BGU50_03295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_096000379.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU50_RS03340Primary locus identifier stored in the genes table.
Old locus tagBGU50_03290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQT01000004.1Sequence record reported by the local genomic context database.
Genomic interval59 475-60 173 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 475-61 792 ntGCF_002301905::NZ_MOQT01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301905::NZ_MOQT01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQT01000004.1All displayed genes belong to this local TCS context.
Neighborhood span59 475-61 792 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 475 nt61 792 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU50_RS03340GCF_002301905#BGU50_RS03340
RRunclassifiedCurrent focus
59 475-60 173 nt · Reverse (-)
BGU50_RS03345GCF_002301905#BGU50_RS03345
HKClassic
60 287-61 792 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301905#BGU50_RS03340The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1127119
Simplified PFAM architecture for RROC_1127119
PFAM domain coverage: 188 / 232 aa (81.0%)
1 aa232 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-226]
- Domain count: 2
- Matched identifier: RROC_1127119
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 151-226 ; HTH_18 151-226
Cluster members and taxonomy
Representative gene: GCF_002301905#BGU50_RS03340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301905
AssemblyASM230190v1 · Contighaploid
Genome composition4 142 854 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key