1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:1.13e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU50_RS01410
Response regulator OmpR family
Clostridioides difficile · GCF_002301905
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301905#BGU50_RS01410Stable P2CS identifier used across views.
GenomeGCF_002301905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:149:4.61e-29:224:76:77- Raw architecture: Response_reg:4:1.13e-32:113:111:111#Trans_reg_C:149:4.61e-29:224:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301905::NZ_MOQT01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62868-64806Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU50_01390RefSeq proteinWP_021363178.1
Context group ID
GCF_002301905::NZ_MOQT01000002.1::G00004Context members
BGU50_RS01410BGU50_RS01415
Partner locus tags
BGU50_RS01410BGU50_RS01415
Partner old locus tags
BGU50_01390BGU50_01395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021363178.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU50_RS01410Primary locus identifier stored in the genes table.
Old locus tagBGU50_01390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQT01000002.1Sequence record reported by the local genomic context database.
Genomic interval62 868-63 554 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 868-64 806 ntGCF_002301905::NZ_MOQT01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301905::NZ_MOQT01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQT01000002.1All displayed genes belong to this local TCS context.
Neighborhood span62 868-64 806 nt1 939 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 868 nt64 806 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU50_RS01410GCF_002301905#BGU50_RS01410
RROmpRCurrent focus
62 868-63 554 nt · Forward (+)
BGU50_RS01415GCF_002301905#BGU50_RS01415
HKClassic
63 565-64 806 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448905#QAY_RS00955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304785
Simplified PFAM architecture for RROC_1304785
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1304785
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-223 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_000448905#QAY_RS00955
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 53 total members. Page 1 / 2.
GCF_000448905#QAY_RS00955 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301905
AssemblyASM230190v1 · Contighaploid
Genome composition4 142 854 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key