1 PAS#1
521-632 aa · 112 aa · 12.3% of protein
Raw token
PAS:521:0.0000817:632:114:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU46_RS05985
Histidine kinase, Classic
Clostridioides difficile · GCF_002301845
ClassHKTypeClassicLength912 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002301845#BGU46_RS05985Stable P2CS identifier used across views.
GenomeGCF_002301845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length912 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage295 / 912 aa (32.3%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa912 aa
Domain-by-domain annotation3 items
2 HisKA#2
655-726 aa · 72 aa · 7.9% of protein
Raw token
HisKA:655:0.00000000000000747:726:72:643 HATPase_c#3
773-883 aa · 111 aa · 12.2% of protein
Raw token
HATPase_c:773:3.8e-31:883:111:109- Raw architecture: PAS:521:0.0000817:632:114:113#HisKA:655:0.00000000000000747:726:72:64#HATPase_c:773:3.8e-31:883:111:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002301845::NZ_MOQX01000045.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9287-12025Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU46_05955RefSeq proteinWP_021373594.1
Context group ID
GCF_002301845::NZ_MOQX01000045.1::G00010Context members
BGU46_RS05985
Partner locus tags
BGU46_RS05985
Partner old locus tags
BGU46_05955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021373594.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU46_RS05985Primary locus identifier stored in the genes table.
Old locus tagBGU46_05955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQX01000045.1Sequence record reported by the local genomic context database.
Genomic interval9 287-12 025 nt2 739 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 287-12 025 ntGCF_002301845::NZ_MOQX01000045.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301845::NZ_MOQX01000045.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQX01000045.1All displayed genes belong to this local TCS context.
Neighborhood span9 287-12 025 nt2 739 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 287 nt12 025 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU46_RS05985GCF_002301845#BGU46_RS05985
HKClassicCurrent focus
9 287-12 025 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449145#QCS_RS12285Use this link to inspect the representative gene detail.
PFAM architecturePAS_8 + PAS_8 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0387887
Simplified PFAM architecture for HKOC_0387887
PFAM domain coverage: 277 / 912 aa (30.4%)
1 aa912 aa
PAS_8PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[303-355] | PAS_8[521-561] | HisKA[655-726] | HATPase_c[773-883]
- Domain count: 4
- Matched identifier: HKOC_0387887
- Positioned domains: PAS_8 303-355 ; PAS_8 521-561 ; HisKA 655-726 ; HATPase_c 773-883
Cluster members and taxonomy
Representative gene: GCF_000449145#QCS_RS12285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301845
AssemblyASM230184v1 · Contighaploid
Genome composition4 007 651 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key