1 HisKA#1
140-206 aa · 67 aa · 18.6% of protein
Raw token
HisKA:140:0.0000000000000138:206:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU41_RS09435
Histidine kinase, Classic
Clostridioides difficile · GCF_002301765
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002301765#BGU41_RS09435Stable P2CS identifier used across views.
GenomeGCF_002301765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 361 aa (42.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
259-344 aa · 86 aa · 23.8% of protein
Raw token
HATPase_c:259:0.0000000547:344:90:109- Raw architecture: HisKA:140:0.0000000000000138:206:67:64#HATPase_c:259:0.0000000547:344:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002301765::NZ_MOQP01000232.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU41_09265RefSeq proteinWP_095890631.1
Context group ID
GCF_002301765::NZ_MOQP01000232.1::G00023Context members
BGU41_RS09435
Partner locus tags
BGU41_RS09435
Partner old locus tags
BGU41_09265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095890631.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU41_RS09435Primary locus identifier stored in the genes table.
Old locus tagBGU41_09265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQP01000232.1Sequence record reported by the local genomic context database.
Genomic interval1-1 086 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 086 ntGCF_002301765::NZ_MOQP01000232.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301765::NZ_MOQP01000232.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQP01000232.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 086 nt1 086 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 086 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU41_RS09435GCF_002301765#BGU41_RS09435
HKClassicCurrent focus
1-1 086 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301765#BGU41_RS09435The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2741768
Simplified PFAM architecture for HKOC_2741768
PFAM domain coverage: 193 / 361 aa (53.5%)
1 aa361 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[86-127] | HisKA[141-206] | HATPase_c[257-341]
- Domain count: 3
- Matched identifier: HKOC_2741768
- Positioned domains: HAMP 86-127 ; HisKA 141-206 ; HATPase_c 257-341
Cluster members and taxonomy
Representative gene: GCF_002301765#BGU41_RS09435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301765
AssemblyASM230176v1 · Contighaploid
Genome composition4 081 648 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key