1 Response_reg#1
5-111 aa · 107 aa · 45.5% of protein
Raw token
Response_reg:5:4.6e-19:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU39_RS19280
Response regulator LytTR family
Clostridioides difficile · GCF_002301715
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002301715#BGU39_RS19280Stable P2CS identifier used across views.
GenomeGCF_002301715Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 235 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-226 aa · 87 aa · 37.0% of protein
Raw token
LytTR:140:1.02e-18:226:93:98- Raw architecture: Response_reg:5:4.6e-19:111:110:111#LytTR:140:1.02e-18:226:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002301715::NZ_MOQN01000208.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2-709Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU39_19005RefSeq proteinWP_095914984.1
Context group ID
GCF_002301715::NZ_MOQN01000208.1::G00055Context members
BGU39_RS19280
Partner locus tags
BGU39_RS19280
Partner old locus tags
BGU39_19005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095914984.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU39_RS19280Primary locus identifier stored in the genes table.
Old locus tagBGU39_19005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQN01000208.1Sequence record reported by the local genomic context database.
Genomic interval2-709 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2-709 ntGCF_002301715::NZ_MOQN01000208.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301715::NZ_MOQN01000208.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQN01000208.1All displayed genes belong to this local TCS context.
Neighborhood span2-709 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 nt709 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU39_RS19280GCF_002301715#BGU39_RS19280
RRLytTRCurrent focus
2-709 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301715#BGU39_RS19280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1022607
Simplified PFAM architecture for RROC_1022607
PFAM domain coverage: 197 / 235 aa (83.8%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-115] | LytTR[140-225]
- Domain count: 2
- Matched identifier: RROC_1022607
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; LytTR 140-225 ; LytTR 140-225
Cluster members and taxonomy
Representative gene: GCF_002301715#BGU39_RS19280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301715
AssemblyASM230171v1 · Contighaploid
Genome composition4 150 438 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key