1 HisKA_3#1
57-122 aa · 66 aa · 25.8% of protein
Raw token
HisKA_3:57:4.17e-20:122:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU39_RS10230
Histidine kinase, Classic
Clostridioides difficile · GCF_002301715
ClassHKTypeClassicLength256 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301715#BGU39_RS10230Stable P2CS identifier used across views.
GenomeGCF_002301715Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 256 aa (59.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
163-247 aa · 85 aa · 33.2% of protein
Raw token
HATPase_c:163:0.00000000418:247:104:109- Raw architecture: HisKA_3:57:4.17e-20:122:67:68#HATPase_c:163:0.00000000418:247:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301715::NZ_MOQN01000040.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73-1483Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU39_10140RefSeq proteinWP_235698727.1
Context group ID
GCF_002301715::NZ_MOQN01000040.1::G00017Context members
BGU39_RS10230BGU39_RS10235
Partner locus tags
BGU39_RS10230BGU39_RS10235
Partner old locus tags
BGU39_10140BGU39_10145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235698727.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU39_RS10230Primary locus identifier stored in the genes table.
Old locus tagBGU39_10140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQN01000040.1Sequence record reported by the local genomic context database.
Genomic interval73-843 nt771 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73-1 483 ntGCF_002301715::NZ_MOQN01000040.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301715::NZ_MOQN01000040.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQN01000040.1All displayed genes belong to this local TCS context.
Neighborhood span73-1 483 nt1 411 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 nt1 483 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU39_RS10230GCF_002301715#BGU39_RS10230
HKClassicCurrent focus
73-843 nt · Forward (+)
BGU39_RS10235GCF_002301715#BGU39_RS10235
RRNarL
836-1 483 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301715#BGU39_RS10230The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2916592
Simplified PFAM architecture for HKOC_2916592
PFAM domain coverage: 150 / 256 aa (58.6%)
1 aa256 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[57-121] | HATPase_c[163-247]
- Domain count: 2
- Matched identifier: HKOC_2916592
- Positioned domains: HisKA_3 57-121 ; HATPase_c 163-247
Cluster members and taxonomy
Representative gene: GCF_002301715#BGU39_RS10230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301715
AssemblyASM230171v1 · Contighaploid
Genome composition4 150 438 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key