1 HAMP#1
166-232 aa · 67 aa · 14.3% of protein
Raw token
HAMP:166:0.00000391:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU38_RS00205
Histidine kinase, Classic
Clostridioides difficile · GCF_002301675
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301675#BGU38_RS00205Stable P2CS identifier used across views.
GenomeGCF_002301675Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 467 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.6% of protein
Raw token
HisKA:245:0.0000000000000199:312:68:643 HATPase_c#3
359-465 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:359:9.9e-27:465:108:109- Raw architecture: HAMP:166:0.00000391:232:69:69#HisKA:245:0.0000000000000199:312:68:64#HATPase_c:359:9.9e-27:465:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301675::NZ_MOQM01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50121-52253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU38_00200RefSeq proteinWP_004454490.1
Context group ID
GCF_002301675::NZ_MOQM01000001.1::G00001Context members
BGU38_RS00200BGU38_RS00205
Partner locus tags
BGU38_RS00200BGU38_RS00205
Partner old locus tags
BGU38_00195BGU38_00200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004454490.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3HD92Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3HD92_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU38_RS00205Primary locus identifier stored in the genes table.
Old locus tagBGU38_00200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQM01000001.1Sequence record reported by the local genomic context database.
Genomic interval50 850-52 253 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 121-52 253 ntGCF_002301675::NZ_MOQM01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301675::NZ_MOQM01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span50 121-52 253 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 121 nt52 253 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU38_RS00200GCF_002301675#BGU38_RS00200
RROmpR
50 121-50 846 nt · Forward (+)
BGU38_RS00205GCF_002301675#BGU38_RS00205
HKClassicCurrent focus
50 850-52 253 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS03855Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747926
Simplified PFAM architecture for HKOC_1747926
PFAM domain coverage: 172 / 467 aa (36.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1747926
- Positioned domains: HisKA 245-309 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS03855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301675
AssemblyASM230167v1 · Contighaploid
Genome composition4 040 534 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key