1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.54e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU34_RS02645
Response regulator OmpR family
Clostridioides difficile · GCF_002301615
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_002301615#BGU34_RS02645Stable P2CS identifier used across views.
GenomeGCF_002301615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:1.1e-27:232:78:77- Raw architecture: Response_reg:5:1.54e-36:114:111:111#Trans_reg_C:155:1.1e-27:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_002301615::NZ_MOQI01000004.1::G00009
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span115318-121041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU34_02640RefSeq proteinWP_021408832.1
Context group ID
GCF_002301615::NZ_MOQI01000004.1::G00009Context members
BGU34_RS02640BGU34_RS02645BGU34_RS02650BGU34_RS02655BGU34_RS02660
Partner locus tags
BGU34_RS02640BGU34_RS02645BGU34_RS02650BGU34_RS02655BGU34_RS02660
Partner old locus tags
BGU34_02635BGU34_02640BGU34_02645BGU34_02650BGU34_02655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021408832.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU34_RS02645Primary locus identifier stored in the genes table.
Old locus tagBGU34_02640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQI01000004.1Sequence record reported by the local genomic context database.
Genomic interval116 469-117 167 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 318-121 041 ntGCF_002301615::NZ_MOQI01000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301615::NZ_MOQI01000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span115 318-121 041 nt5 724 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 318 nt121 041 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
BGU34_RS02640GCF_002301615#BGU34_RS02640
HKClassic
115 318-116 433 nt · Reverse (-)
BGU34_RS02645GCF_002301615#BGU34_RS02645
RROmpRCurrent focus
116 469-117 167 nt · Reverse (-)
BGU34_RS02650GCF_002301615#BGU34_RS02650
RROmpR
117 547-118 227 nt · Reverse (-)
BGU34_RS02655GCF_002301615#BGU34_RS02655
HKClassic
118 277-120 292 nt · Reverse (-)
BGU34_RS02660GCF_002301615#BGU34_RS02660
RROmpR
120 364-121 041 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS16550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121689
Simplified PFAM architecture for RROC_1121689
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1121689
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS16550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301615
AssemblyASM230161v1 · Contighaploid
Genome composition4 168 644 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key