1 HAMP#1
154-220 aa · 67 aa · 15.3% of protein
Raw token
HAMP:154:0.00000000049:220:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU29_RS06495
Histidine kinase, Classic
Clostridioides difficile · GCF_002301555
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301555#BGU29_RS06495Stable P2CS identifier used across views.
GenomeGCF_002301555Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage218 / 438 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-289 aa · 59 aa · 13.5% of protein
Raw token
HisKA:231:0.000000000173:289:59:643 HATPase_c#3
346-437 aa · 92 aa · 21.0% of protein
Raw token
HATPase_c:346:0.00000000954:437:108:109- Raw architecture: HAMP:154:0.00000000049:220:70:69#HisKA:231:0.000000000173:289:59:64#HATPase_c:346:0.00000000954:437:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301555::NZ_MOQD01000005.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span245591-247604Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU29_06430RefSeq proteinWP_095895811.1
Context group ID
GCF_002301555::NZ_MOQD01000005.1::G00019Context members
BGU29_RS06490BGU29_RS06495
Partner locus tags
BGU29_RS06490BGU29_RS06495
Partner old locus tags
BGU29_06425BGU29_06430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095895811.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU29_RS06495Primary locus identifier stored in the genes table.
Old locus tagBGU29_06430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQD01000005.1Sequence record reported by the local genomic context database.
Genomic interval246 288-247 604 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span245 591-247 604 ntGCF_002301555::NZ_MOQD01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301555::NZ_MOQD01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQD01000005.1All displayed genes belong to this local TCS context.
Neighborhood span245 591-247 604 nt2 014 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
245 591 nt247 604 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU29_RS06490GCF_002301555#BGU29_RS06490
RROmpR
245 591-246 295 nt · Forward (+)
BGU29_RS06495GCF_002301555#BGU29_RS06495
HKClassicCurrent focus
246 288-247 604 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301555#BGU29_RS06495The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c_53 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2094346
Simplified PFAM architecture for HKOC_2094346
PFAM domain coverage: 175 / 438 aa (40.0%)
1 aa438 aa
HAMPHisKAHATPase_c_5
- Simplified architecture: HAMP + HisKA + HATPase_c_5
- Raw architecture: HAMP[175-219] | HisKA[233-289] | HATPase_c_5[362-434]
- Domain count: 3
- Matched identifier: HKOC_2094346
- Positioned domains: HAMP 175-219 ; HisKA 233-289 ; HATPase_c_5 362-434
Cluster members and taxonomy
Representative gene: GCF_002301555#BGU29_RS06495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301555
AssemblyASM230155v1 · Contighaploid
Genome composition4 219 026 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key