1 Response_reg#1
4-116 aa · 113 aa · 47.7% of protein
Raw token
Response_reg:4:1.52e-18:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU28_RS05660
Response regulator LytTR family
Clostridioides difficile · GCF_002301525
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002301525#BGU28_RS05660Stable P2CS identifier used across views.
GenomeGCF_002301525Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 237 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-228 aa · 92 aa · 38.8% of protein
Raw token
LytTR:137:4.87e-22:228:97:98- Raw architecture: Response_reg:4:1.52e-18:116:116:111#LytTR:137:4.87e-22:228:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002301525::NZ_MOQC01000004.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span227113-227826Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU28_05575RefSeq proteinWP_009902266.1
Context group ID
GCF_002301525::NZ_MOQC01000004.1::G00012Context members
BGU28_RS05660
Partner locus tags
BGU28_RS05660
Partner old locus tags
BGU28_05575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009902266.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QBE1Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QBE1_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU28_RS05660Primary locus identifier stored in the genes table.
Old locus tagBGU28_05575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQC01000004.1Sequence record reported by the local genomic context database.
Genomic interval227 113-227 826 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span227 113-227 826 ntGCF_002301525::NZ_MOQC01000004.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301525::NZ_MOQC01000004.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQC01000004.1All displayed genes belong to this local TCS context.
Neighborhood span227 113-227 826 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 113 nt227 826 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU28_RS05660GCF_002301525#BGU28_RS05660
RRLytTRCurrent focus
227 113-227 826 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0206205Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961604
Simplified PFAM architecture for RROC_0961604
PFAM domain coverage: 204 / 237 aa (86.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0961604
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0206205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301525
AssemblyASM230152v1 · Contighaploid
Genome composition4 099 540 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key