1 HisKA#1
125-188 aa · 64 aa · 18.4% of protein
Raw token
HisKA:125:0.0000000000000264:188:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU27_RS04905
Histidine kinase, Classic
Clostridioides difficile · GCF_002301505
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301505#BGU27_RS04905Stable P2CS identifier used across views.
GenomeGCF_002301505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 347 aa (49.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
238-346 aa · 109 aa · 31.4% of protein
Raw token
HATPase_c:238:2.42e-27:346:110:109- Raw architecture: HisKA:125:0.0000000000000264:188:64:64#HATPase_c:238:2.42e-27:346:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301505::NZ_MOQB01000010.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11921-13715Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU27_04880RefSeq proteinWP_095909033.1
Context group ID
GCF_002301505::NZ_MOQB01000010.1::G00016Context members
BGU27_RS04905BGU27_RS04910
Partner locus tags
BGU27_RS04905BGU27_RS04910
Partner old locus tags
BGU27_04880BGU27_04885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095909033.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU27_RS04905Primary locus identifier stored in the genes table.
Old locus tagBGU27_04880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQB01000010.1Sequence record reported by the local genomic context database.
Genomic interval11 921-12 964 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 921-13 715 ntGCF_002301505::NZ_MOQB01000010.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301505::NZ_MOQB01000010.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQB01000010.1All displayed genes belong to this local TCS context.
Neighborhood span11 921-13 715 nt1 795 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 921 nt13 715 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU27_RS04905GCF_002301505#BGU27_RS04905
HKClassicCurrent focus
11 921-12 964 nt · Reverse (-)
BGU27_RS04910GCF_002301505#BGU27_RS04910
RROmpR
13 017-13 715 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301505#BGU27_RS04905The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2811083
Simplified PFAM architecture for HKOC_2811083
PFAM domain coverage: 173 / 347 aa (49.9%)
1 aa347 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[126-189] | HATPase_c[238-346]
- Domain count: 2
- Matched identifier: HKOC_2811083
- Positioned domains: HisKA 126-189 ; HATPase_c 238-346
Cluster members and taxonomy
Representative gene: GCF_002301505#BGU27_RS04905
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 2 over 2 total members. Page 1 / 1.
GCF_002301505#BGU27_RS04905 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301505
AssemblyASM230150v1 · Contighaploid
Genome composition4 214 848 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key