1 Response_reg#1
3-112 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:3:6.07e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU24_RS15630
Response regulator OmpR family
Clostridioides difficile · GCF_002301465
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301465#BGU24_RS15630Stable P2CS identifier used across views.
GenomeGCF_002301465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:7.67e-29:227:77:77- Raw architecture: Response_reg:3:6.07e-31:112:111:111#Trans_reg_C:151:7.67e-29:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301465::NZ_MOPY01000055.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19020-20629Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU24_15430RefSeq proteinWP_022619676.1
Context group ID
GCF_002301465::NZ_MOPY01000055.1::G00046Context members
BGU24_RS15625BGU24_RS15630
Partner locus tags
BGU24_RS15625BGU24_RS15630
Partner old locus tags
BGU24_15425BGU24_15430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022619676.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU24_RS15630Primary locus identifier stored in the genes table.
Old locus tagBGU24_15430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOPY01000055.1Sequence record reported by the local genomic context database.
Genomic interval19 937-20 629 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 020-20 629 ntGCF_002301465::NZ_MOPY01000055.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301465::NZ_MOPY01000055.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOPY01000055.1All displayed genes belong to this local TCS context.
Neighborhood span19 020-20 629 nt1 610 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 020 nt20 629 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU24_RS15625GCF_002301465#BGU24_RS15625
HKClassic
19 020-19 937 nt · Reverse (-)
BGU24_RS15630GCF_002301465#BGU24_RS15630
RROmpRCurrent focus
19 937-20 629 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS03160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202432
Simplified PFAM architecture for RROC_1202432
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[154-227]
- Domain count: 2
- Matched identifier: RROC_1202432
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 154-227 ; Trans_reg_C 154-227
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS03160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301465
AssemblyASM230146v1 · Contighaploid
Genome composition4 143 658 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key