1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:6.6e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU16_RS13035
Response regulator OmpR family
Clostridioides difficile · GCF_002301265
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301265#BGU16_RS13035Stable P2CS identifier used across views.
GenomeGCF_002301265Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:148:1.31e-29:223:76:77- Raw architecture: Response_reg:4:6.6e-32:113:111:111#Trans_reg_C:148:1.31e-29:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301265::NZ_MOPQ01000033.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13592-15527Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU16_12925RefSeq proteinWP_021364382.1
Context group ID
GCF_002301265::NZ_MOPQ01000033.1::G00037Context members
BGU16_RS13035BGU16_RS13040
Partner locus tags
BGU16_RS13035BGU16_RS13040
Partner old locus tags
BGU16_12925BGU16_12930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021364382.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU16_RS13035Primary locus identifier stored in the genes table.
Old locus tagBGU16_12925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOPQ01000033.1Sequence record reported by the local genomic context database.
Genomic interval13 592-14 275 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 592-15 527 ntGCF_002301265::NZ_MOPQ01000033.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301265::NZ_MOPQ01000033.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOPQ01000033.1All displayed genes belong to this local TCS context.
Neighborhood span13 592-15 527 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 592 nt15 527 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU16_RS13035GCF_002301265#BGU16_RS13035
RROmpRCurrent focus
13 592-14 275 nt · Forward (+)
BGU16_RS13040GCF_002301265#BGU16_RS13040
HKClassic
14 286-15 527 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS05730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1356921
Simplified PFAM architecture for RROC_1356921
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1356921
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS05730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301265
AssemblyASM230126v1 · Contighaploid
Genome composition4 191 900 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key