1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:5.11e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU11_RS07920
Response regulator OmpR family
Clostridioides difficile · GCF_002301165
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_002301165#BGU11_RS07920Stable P2CS identifier used across views.
GenomeGCF_002301165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:8.37e-22:223:75:77- Raw architecture: Response_reg:5:5.11e-22:114:111:111#Trans_reg_C:150:8.37e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_002301165::NZ_MOPL01000010.1::G00021
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span94573-100299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU11_07820RefSeq proteinWP_095906342.1
Context group ID
GCF_002301165::NZ_MOPL01000010.1::G00021Context members
BGU11_RS07910BGU11_RS07915BGU11_RS07920BGU11_RS07925BGU11_RS07930
Partner locus tags
BGU11_RS07910BGU11_RS07915BGU11_RS07920BGU11_RS07925BGU11_RS07930
Partner old locus tags
BGU11_07810BGU11_07815BGU11_07820BGU11_07825BGU11_07830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095906342.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU11_RS07920Primary locus identifier stored in the genes table.
Old locus tagBGU11_07820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOPL01000010.1Sequence record reported by the local genomic context database.
Genomic interval96 805-97 485 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span94 573-100 299 ntGCF_002301165::NZ_MOPL01000010.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301165::NZ_MOPL01000010.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOPL01000010.1All displayed genes belong to this local TCS context.
Neighborhood span94 573-100 299 nt5 727 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 573 nt100 299 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
BGU11_RS07910GCF_002301165#BGU11_RS07910
HKClassic
94 573-95 688 nt · Reverse (-)
BGU11_RS07915GCF_002301165#BGU11_RS07915
RROmpR
95 724-96 422 nt · Reverse (-)
BGU11_RS07920GCF_002301165#BGU11_RS07920
RROmpRCurrent focus
96 805-97 485 nt · Reverse (-)
BGU11_RS07925GCF_002301165#BGU11_RS07925
HKClassic
97 535-99 550 nt · Reverse (-)
BGU11_RS07930GCF_002301165#BGU11_RS07930
RROmpR
99 622-100 299 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301165#BGU11_RS07920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1418404
Simplified PFAM architecture for RROC_1418404
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1418404
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_002301165#BGU11_RS07920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301165
AssemblyASM230116v1 · Contighaploid
Genome composition4 255 730 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key