1 HisKA_3#1
188-253 aa · 66 aa · 17.1% of protein
Raw token
HisKA_3:188:3.62e-20:253:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU10_RS08110
Histidine kinase, Classic
Clostridioides difficile · GCF_002301145
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301145#BGU10_RS08110Stable P2CS identifier used across views.
GenomeGCF_002301145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 387 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa387 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-378 aa · 85 aa · 22.0% of protein
Raw token
HATPase_c:294:0.000000000326:378:104:109- Raw architecture: HisKA_3:188:3.62e-20:253:67:68#HATPase_c:294:0.000000000326:378:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301145::NZ_MOPK01000005.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span214671-216474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU10_08000RefSeq proteinWP_021364418.1
Context group ID
GCF_002301145::NZ_MOPK01000005.1::G00017Context members
BGU10_RS08105BGU10_RS08110
Partner locus tags
BGU10_RS08105BGU10_RS08110
Partner old locus tags
BGU10_07995BGU10_08000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021364418.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU10_RS08110Primary locus identifier stored in the genes table.
Old locus tagBGU10_08000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOPK01000005.1Sequence record reported by the local genomic context database.
Genomic interval215 311-216 474 nt1 164 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span214 671-216 474 ntGCF_002301145::NZ_MOPK01000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301145::NZ_MOPK01000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOPK01000005.1All displayed genes belong to this local TCS context.
Neighborhood span214 671-216 474 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
214 671 nt216 474 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU10_RS08105GCF_002301145#BGU10_RS08105
RRNarL
214 671-215 318 nt · Reverse (-)
BGU10_RS08110GCF_002301145#BGU10_RS08110
HKClassicCurrent focus
215 311-216 474 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS06915Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550380
Simplified PFAM architecture for HKOC_2550380
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550380
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS06915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301145
AssemblyASM230114v1 · Contighaploid
Genome composition4 077 149 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key