1 GAF_3#1
122-245 aa · 124 aa · 25.4% of protein
Raw token
GAF_3:122:0.000000624:245:129:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU06_RS20790
Histidine kinase, Classic
Clostridioides difficile · GCF_002301085
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301085#BGU06_RS20790Stable P2CS identifier used across views.
GenomeGCF_002301085Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage305 / 488 aa (62.5%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-332 aa · 68 aa · 13.9% of protein
Raw token
HisKA:265:0.00000000000243:332:68:643 HATPase_c#3
376-488 aa · 113 aa · 23.2% of protein
Raw token
HATPase_c:376:9.17e-31:488:113:109- Raw architecture: GAF_3:122:0.000000624:245:129:129#HisKA:265:0.00000000000243:332:68:64#HATPase_c:376:9.17e-31:488:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301085::NZ_MOPG01000009.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12730-14931Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002301085::NZ_MOPG01000009.1::G00032Context members
BGU06_RS20790BGU06_RS11465
Partner locus tags
BGU06_RS20790BGU06_RS11465
Partner old locus tags
BGU06_11330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330398582.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU06_RS20790Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_MOPG01000009.1Sequence record reported by the local genomic context database.
Genomic interval12 730-14 196 nt1 467 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 730-14 931 ntGCF_002301085::NZ_MOPG01000009.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301085::NZ_MOPG01000009.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOPG01000009.1All displayed genes belong to this local TCS context.
Neighborhood span12 730-14 931 nt2 202 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 730 nt14 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU06_RS20790GCF_002301085#BGU06_RS20790
HKClassicCurrent focus
12 730-14 196 nt · Forward (+)
BGU06_RS11465GCF_002301085#BGU06_RS11465
RROmpR
14 233-14 931 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301085#BGU06_RS20790The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1551310
Simplified PFAM architecture for HKOC_1551310
PFAM domain coverage: 280 / 488 aa (57.4%)
1 aa488 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[3-103] | HisKA[265-332] | HATPase_c[377-487]
- Domain count: 3
- Matched identifier: HKOC_1551310
- Positioned domains: DUF4118 3-103 ; HisKA 265-332 ; HATPase_c 377-487
Cluster members and taxonomy
Representative gene: GCF_002301085#BGU06_RS20790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301085
AssemblyASM230108v1 · Contighaploid
Genome composition4 239 504 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key