1 Response_reg#1
1-57 aa · 57 aa · 33.7% of protein
Raw token
Response_reg:1:0.00000000843:57:58:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGT97_RS20890
Response regulator OmpR family
Clostridioides difficile · GCF_002300865
ClassRRTypeOmpRLength169 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002300865#BGT97_RS20890Stable P2CS identifier used across views.
GenomeGCF_002300865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length169 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage134 / 169 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa169 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
90-166 aa · 77 aa · 45.6% of protein
Raw token
Trans_reg_C:90:1.46e-21:166:78:77- Raw architecture: Response_reg:1:0.00000000843:57:58:111#Trans_reg_C:90:1.46e-21:166:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002300865::NZ_MNBR01000250.1::G00060
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-510Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGT97_20650RefSeq proteinWP_095906760.1
Context group ID
GCF_002300865::NZ_MNBR01000250.1::G00060Context members
BGT97_RS20890
Partner locus tags
BGT97_RS20890
Partner old locus tags
BGT97_20650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095906760.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGT97_RS20890Primary locus identifier stored in the genes table.
Old locus tagBGT97_20650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MNBR01000250.1Sequence record reported by the local genomic context database.
Genomic interval1-510 nt510 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-510 ntGCF_002300865::NZ_MNBR01000250.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002300865::NZ_MNBR01000250.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MNBR01000250.1All displayed genes belong to this local TCS context.
Neighborhood span1-510 nt510 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt510 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGT97_RS20890GCF_002300865#BGT97_RS20890
RROmpRCurrent focus
1-510 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251225#QQO60_RS15075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1143242
Simplified PFAM architecture for RROC_1143242
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-119] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1143242
- Positioned domains: Response_reg 11-119 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_030251225#QQO60_RS15075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002300865
AssemblyASM230086v1 · Contighaploid
Genome composition4 443 564 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key