1 Response_reg#1
3-114 aa · 112 aa · 25.3% of protein
Raw token
Response_reg:3:7.2e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGT97_RS17570
Response regulator NtrC family
Clostridioides difficile · GCF_002300865
ClassRRTypeNtrCLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002300865#BGT97_RS17570Stable P2CS identifier used across views.
GenomeGCF_002300865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage271 / 443 aa (61.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa443 aa
Domain-by-domain annotation3 items
2 AAA_5#2
157-275 aa · 119 aa · 26.9% of protein
Raw token
AAA_5:157:0.0000000012:275:128:1353 HTH_8#3
398-437 aa · 40 aa · 9.0% of protein
Raw token
HTH_8:398:0.000000000172:437:40:40- Raw architecture: Response_reg:3:7.2e-26:114:112:111#AAA_5:157:0.0000000012:275:128:135#HTH_8:398:0.000000000172:437:40:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002300865::NZ_MNBR01000118.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8442-11767Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGT97_17395RefSeq proteinWP_095906702.1
Context group ID
GCF_002300865::NZ_MNBR01000118.1::G00050Context members
BGT97_RS17565BGT97_RS17570
Partner locus tags
BGT97_RS17565BGT97_RS17570
Partner old locus tags
BGT97_17390BGT97_17395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095906702.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGT97_RS17570Primary locus identifier stored in the genes table.
Old locus tagBGT97_17395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MNBR01000118.1Sequence record reported by the local genomic context database.
Genomic interval10 436-11 767 nt1 332 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 442-11 767 ntGCF_002300865::NZ_MNBR01000118.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002300865::NZ_MNBR01000118.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MNBR01000118.1All displayed genes belong to this local TCS context.
Neighborhood span8 442-11 767 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 442 nt11 767 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGT97_RS17565GCF_002300865#BGT97_RS17565
HKClassic
8 442-10 436 nt · Forward (+)
BGT97_RS17570GCF_002300865#BGT97_RS17570
RRNtrCCurrent focus
10 436-11 767 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002300865#BGT97_RS17570The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0323242
Simplified PFAM architecture for RROC_0323242
PFAM domain coverage: 386 / 443 aa (87.1%)
1 aa443 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[3-113] | Sigma54_activat[137-300] | AAA_lid_14[306-375] | HTH_8[397-437]
- Domain count: 4
- Matched identifier: RROC_0323242
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Sigma54_activat 137-300 ; Sigma54_activat 137-300 ; AAA_lid_14 306-375 ; AAA_lid_14 306-375 ; HTH_8 397-437 ; HTH_8 397-437
Cluster members and taxonomy
Representative gene: GCF_002300865#BGT97_RS17570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002300865
AssemblyASM230086v1 · Contighaploid
Genome composition4 443 564 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key