1 Response_reg#1
3-112 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:3:5.15e-33:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGT93_RS11265
Response regulator OmpR family
Clostridioides difficile · GCF_002300835
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002300835#BGT93_RS11265Stable P2CS identifier used across views.
GenomeGCF_002300835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:5.29e-26:221:78:77- Raw architecture: Response_reg:3:5.15e-33:112:110:111#Trans_reg_C:146:5.29e-26:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002300835::NZ_MNBA01000127.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84188-85899Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGT93_11035RefSeq proteinWP_004849790.1
Context group ID
GCF_002300835::NZ_MNBA01000127.1::G00037Context members
BGT93_RS11260BGT93_RS11265
Partner locus tags
BGT93_RS11260BGT93_RS11265
Partner old locus tags
BGT93_11030BGT93_11035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004849790.1Primary protein accession used for annex mappings.
UniProt accessionA0A174PRS4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174PRS4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGT93_RS11265Primary locus identifier stored in the genes table.
Old locus tagBGT93_11035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MNBA01000127.1Sequence record reported by the local genomic context database.
Genomic interval85 216-85 899 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 188-85 899 ntGCF_002300835::NZ_MNBA01000127.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002300835::NZ_MNBA01000127.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MNBA01000127.1All displayed genes belong to this local TCS context.
Neighborhood span84 188-85 899 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 188 nt85 899 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGT93_RS11260GCF_002300835#BGT93_RS11260
HKClassic
84 188-85 219 nt · Reverse (-)
BGT93_RS11265GCF_002300835#BGT93_RS11265
RROmpRCurrent focus
85 216-85 899 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS03070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354478
Simplified PFAM architecture for RROC_1354478
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1354478
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS03070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002300835
AssemblyASM230083v1 · Contighaploid
Genome composition4 186 777 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key