1 Response_reg#1
3-112 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:3:1.6e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYO_RS10220
Response regulator OmpR family
Bifidobacterium myosotis · GCF_002259745
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002259745#BMYO_RS10220Stable P2CS identifier used across views.
GenomeGCF_002259745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:155:2e-27:229:75:77- Raw architecture: Response_reg:3:1.6e-30:112:111:111#Trans_reg_C:155:2e-27:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002259745::NZ_MWWW01000028.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49596-53356Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMYO_1958RefSeq proteinWP_094668363.1
Context group ID
GCF_002259745::NZ_MWWW01000028.1::G00015Context members
BMYO_RS10215BMYO_RS10220
Partner locus tags
BMYO_RS10215BMYO_RS10220
Partner old locus tags
BMYO_1957BMYO_1958
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_094668363.1Primary protein accession used for annex mappings.
UniProt accessionA0A261FE78Primary UniProt accession resolved in the annex database.
UniProt IDA0A261FE78_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYO_RS10220Primary locus identifier stored in the genes table.
Old locus tagBMYO_1958Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWWW01000028.1Sequence record reported by the local genomic context database.
Genomic interval52 643-53 356 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 596-53 356 ntGCF_002259745::NZ_MWWW01000028.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002259745::NZ_MWWW01000028.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWWW01000028.1All displayed genes belong to this local TCS context.
Neighborhood span49 596-53 356 nt3 761 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 596 nt53 356 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYO_RS10215GCF_002259745#BMYO_RS10215
HKClassic
49 596-52 628 nt · Forward (+)
BMYO_RS10220GCF_002259745#BMYO_RS10220
RROmpRCurrent focus
52 643-53 356 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS10220The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0966682
Simplified PFAM architecture for RROC_0966682
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_0966682
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS10220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_002259745
AssemblyASM225974v1 · Contigreference genome · haploid
Genome composition2 944 195 bp · 62,5% GCBifidobacterium myosotis
Signal transduction countsGenes 39 · HK 17 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key