1 Response_reg#1
3-106 aa · 104 aa · 40.2% of protein
Raw token
Response_reg:3:4.69e-23:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYO_RS09665
Response regulator NarL family
Bifidobacterium myosotis · GCF_002259745
ClassRRTypeNarLLength259 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002259745#BMYO_RS09665Stable P2CS identifier used across views.
GenomeGCF_002259745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length259 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 259 aa (61.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa259 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
198-253 aa · 56 aa · 21.6% of protein
Raw token
HTH_LUXR:198:4.77e-19:253:56:58- Raw architecture: Response_reg:3:4.69e-23:106:104:111#HTH_LUXR:198:4.77e-19:253:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002259745::NZ_MWWW01000026.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32223-34516Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMYO_1851RefSeq proteinWP_094668259.1
Context group ID
GCF_002259745::NZ_MWWW01000026.1::G00011Context members
BMYO_RS09665BMYO_RS09670
Partner locus tags
BMYO_RS09665BMYO_RS09670
Partner old locus tags
BMYO_1851BMYO_1852
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_094668259.1Primary protein accession used for annex mappings.
UniProt accessionA0A261FEW4Primary UniProt accession resolved in the annex database.
UniProt IDA0A261FEW4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYO_RS09665Primary locus identifier stored in the genes table.
Old locus tagBMYO_1851Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWWW01000026.1Sequence record reported by the local genomic context database.
Genomic interval32 223-33 002 nt780 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 223-34 516 ntGCF_002259745::NZ_MWWW01000026.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002259745::NZ_MWWW01000026.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWWW01000026.1All displayed genes belong to this local TCS context.
Neighborhood span32 223-34 516 nt2 294 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 223 nt34 516 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYO_RS09665GCF_002259745#BMYO_RS09665
RRNarLCurrent focus
32 223-33 002 nt · Reverse (-)
BMYO_RS09670GCF_002259745#BMYO_RS09670
HKClassic
32 999-34 516 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS09665The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0658154
Simplified PFAM architecture for RROC_0658154
PFAM domain coverage: 159 / 259 aa (61.4%)
1 aa259 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[199-252]
- Domain count: 2
- Matched identifier: RROC_0658154
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 199-252 ; GerE 199-252
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS09665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_002259745
AssemblyASM225974v1 · Contigreference genome · haploid
Genome composition2 944 195 bp · 62,5% GCBifidobacterium myosotis
Signal transduction countsGenes 39 · HK 17 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key