1 Response_reg#1
4-116 aa · 113 aa · 48.5% of protein
Raw token
Response_reg:4:2.37e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYO_RS07155
Response regulator OmpR family
Bifidobacterium myosotis · GCF_002259745
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002259745#BMYO_RS07155Stable P2CS identifier used across views.
GenomeGCF_002259745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-232 aa · 74 aa · 31.8% of protein
Raw token
Trans_reg_C:159:0.00000000000427:232:76:77- Raw architecture: Response_reg:4:2.37e-33:116:113:111#Trans_reg_C:159:0.00000000000427:232:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002259745::NZ_MWWW01000014.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91647-93853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMYO_1364RefSeq proteinWP_094667804.1
Context group ID
GCF_002259745::NZ_MWWW01000014.1::G00008Context members
BMYO_RS07150BMYO_RS07155
Partner locus tags
BMYO_RS07150BMYO_RS07155
Partner old locus tags
BMYO_1363BMYO_1364
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_094667804.1Primary protein accession used for annex mappings.
UniProt accessionA0A261FK38Primary UniProt accession resolved in the annex database.
UniProt IDA0A261FK38_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYO_RS07155Primary locus identifier stored in the genes table.
Old locus tagBMYO_1364Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWWW01000014.1Sequence record reported by the local genomic context database.
Genomic interval93 152-93 853 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91 647-93 853 ntGCF_002259745::NZ_MWWW01000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002259745::NZ_MWWW01000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWWW01000014.1All displayed genes belong to this local TCS context.
Neighborhood span91 647-93 853 nt2 207 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 647 nt93 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYO_RS07150GCF_002259745#BMYO_RS07150
HKClassic
91 647-93 155 nt · Reverse (-)
BMYO_RS07155GCF_002259745#BMYO_RS07155
RROmpRCurrent focus
93 152-93 853 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS07155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1088037
Simplified PFAM architecture for RROC_1088037
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[159-232]
- Domain count: 2
- Matched identifier: RROC_1088037
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Trans_reg_C 159-232 ; Trans_reg_C 159-232
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS07155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_002259745
AssemblyASM225974v1 · Contigreference genome · haploid
Genome composition2 944 195 bp · 62,5% GCBifidobacterium myosotis
Signal transduction countsGenes 39 · HK 17 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key