1 Response_reg#1
12-128 aa · 117 aa · 41.3% of protein
Raw token
Response_reg:12:0.000000000116:128:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYO_RS05615
Response regulator NarL family
Bifidobacterium myosotis · GCF_002259745
ClassRRTypeNarLLength283 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002259745#BMYO_RS05615Stable P2CS identifier used across views.
GenomeGCF_002259745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length283 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 283 aa (60.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa283 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
226-279 aa · 54 aa · 19.1% of protein
Raw token
HTH_LUXR:226:0.00000000000169:279:54:58- Raw architecture: Response_reg:12:0.000000000116:128:118:111#HTH_LUXR:226:0.00000000000169:279:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002259745::NZ_MWWW01000011.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span43453-44304Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMYO_1072RefSeq proteinWP_094667537.1
Context group ID
GCF_002259745::NZ_MWWW01000011.1::G00001Context members
BMYO_RS05615
Partner locus tags
BMYO_RS05615
Partner old locus tags
BMYO_1072
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_094667537.1Primary protein accession used for annex mappings.
UniProt accessionA0A261FL71Primary UniProt accession resolved in the annex database.
UniProt IDA0A261FL71_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYO_RS05615Primary locus identifier stored in the genes table.
Old locus tagBMYO_1072Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWWW01000011.1Sequence record reported by the local genomic context database.
Genomic interval43 453-44 304 nt852 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 453-44 304 ntGCF_002259745::NZ_MWWW01000011.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002259745::NZ_MWWW01000011.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWWW01000011.1All displayed genes belong to this local TCS context.
Neighborhood span43 453-44 304 nt852 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 453 nt44 304 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYO_RS05615GCF_002259745#BMYO_RS05615
RRNarLCurrent focus
43 453-44 304 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS05615The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0593556
Simplified PFAM architecture for RROC_0593556
PFAM domain coverage: 164 / 283 aa (58.0%)
1 aa283 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-127] | GerE[226-278]
- Domain count: 2
- Matched identifier: RROC_0593556
- Positioned domains: Response_reg 17-127 ; Response_reg 17-127 ; GerE 226-278 ; GerE 226-278
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS05615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_002259745
AssemblyASM225974v1 · Contigreference genome · haploid
Genome composition2 944 195 bp · 62,5% GCBifidobacterium myosotis
Signal transduction countsGenes 39 · HK 17 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key