1 HisKA#1
116-177 aa · 62 aa · 18.6% of protein
Raw token
HisKA:116:0.000000000238:177:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYO_RS04280
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_002259745
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002259745#BMYO_RS04280Stable P2CS identifier used across views.
GenomeGCF_002259745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 333 aa (51.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
224-333 aa · 110 aa · 33.0% of protein
Raw token
HATPase_c:224:2.89e-20:333:111:109- Raw architecture: HisKA:116:0.000000000238:177:62:64#HATPase_c:224:2.89e-20:333:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002259745::NZ_MWWW01000008.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30267-32071Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMYO_0820RefSeq proteinWP_158216946.1
Context group ID
GCF_002259745::NZ_MWWW01000008.1::G00022Context members
BMYO_RS04280BMYO_RS04285
Partner locus tags
BMYO_RS04280BMYO_RS04285
Partner old locus tags
BMYO_0820BMYO_0821
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158216946.1Primary protein accession used for annex mappings.
UniProt accessionA0A261FMI7Primary UniProt accession resolved in the annex database.
UniProt IDA0A261FMI7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYO_RS04280Primary locus identifier stored in the genes table.
Old locus tagBMYO_0820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWWW01000008.1Sequence record reported by the local genomic context database.
Genomic interval30 267-31 268 nt1 002 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 267-32 071 ntGCF_002259745::NZ_MWWW01000008.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002259745::NZ_MWWW01000008.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWWW01000008.1All displayed genes belong to this local TCS context.
Neighborhood span30 267-32 071 nt1 805 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 267 nt32 071 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYO_RS04280GCF_002259745#BMYO_RS04280
HKClassicCurrent focus
30 267-31 268 nt · Reverse (-)
BMYO_RS04285GCF_002259745#BMYO_RS04285
RROmpR
31 376-32 071 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS04280The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2851880
Simplified PFAM architecture for HKOC_2851880
PFAM domain coverage: 170 / 333 aa (51.1%)
1 aa333 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[116-177] | HATPase_c[225-332]
- Domain count: 2
- Matched identifier: HKOC_2851880
- Positioned domains: HisKA 116-177 ; HATPase_c 225-332
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS04280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_002259745
AssemblyASM225974v1 · Contigreference genome · haploid
Genome composition2 944 195 bp · 62,5% GCBifidobacterium myosotis
Signal transduction countsGenes 39 · HK 17 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key