1 HAMP#1
214-283 aa · 70 aa · 12.2% of protein
Raw token
HAMP:214:1.7e-16:283:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYO_RS03760
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_002259745
ClassHKTypeClassicLength572 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002259745#BMYO_RS03760Stable P2CS identifier used across views.
GenomeGCF_002259745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length572 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 572 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa572 aa
Domain-by-domain annotation3 items
2 HisKA#2
294-361 aa · 68 aa · 11.9% of protein
Raw token
HisKA:294:0.0000000000000131:361:68:643 HATPase_c#3
408-518 aa · 111 aa · 19.4% of protein
Raw token
HATPase_c:408:2.91e-29:518:111:109- Raw architecture: HAMP:214:1.7e-16:283:70:69#HisKA:294:0.0000000000000131:361:68:64#HATPase_c:408:2.91e-29:518:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002259745::NZ_MWWW01000006.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2797-5255Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMYO_0717RefSeq proteinWP_233428128.1
Context group ID
GCF_002259745::NZ_MWWW01000006.1::G00019Context members
BMYO_RS03760BMYO_RS03765
Partner locus tags
BMYO_RS03760BMYO_RS03765
Partner old locus tags
BMYO_0717BMYO_0718
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233428128.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYO_RS03760Primary locus identifier stored in the genes table.
Old locus tagBMYO_0717Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWWW01000006.1Sequence record reported by the local genomic context database.
Genomic interval2 797-4 524 nt1 728 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 797-5 255 ntGCF_002259745::NZ_MWWW01000006.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002259745::NZ_MWWW01000006.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWWW01000006.1All displayed genes belong to this local TCS context.
Neighborhood span2 797-5 255 nt2 459 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 797 nt5 255 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYO_RS03760GCF_002259745#BMYO_RS03760
HKClassicCurrent focus
2 797-4 524 nt · Reverse (-)
BMYO_RS03765GCF_002259745#BMYO_RS03765
RROmpR
4 530-5 255 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS03760The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1203022
Simplified PFAM architecture for HKOC_1203022
PFAM domain coverage: 230 / 572 aa (40.2%)
1 aa572 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[231-283] | HisKA[295-361] | HATPase_c[408-517]
- Domain count: 3
- Matched identifier: HKOC_1203022
- Positioned domains: HAMP 231-283 ; HisKA 295-361 ; HATPase_c 408-517
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS03760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_002259745
AssemblyASM225974v1 · Contigreference genome · haploid
Genome composition2 944 195 bp · 62,5% GCBifidobacterium myosotis
Signal transduction countsGenes 39 · HK 17 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key