1 HisKA_3#1
171-235 aa · 65 aa · 16.5% of protein
Raw token
HisKA_3:171:0.0000000000266:235:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYO_RS03520
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_002259745
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002259745#BMYO_RS03520Stable P2CS identifier used across views.
GenomeGCF_002259745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 393 aa (36.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
301-379 aa · 79 aa · 20.1% of protein
Raw token
HATPase_c:301:0.0000168:379:85:109- Raw architecture: HisKA_3:171:0.0000000000266:235:65:68#HATPase_c:301:0.0000168:379:85:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002259745::NZ_MWWW01000005.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span175575-177480Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMYO_0670RefSeq proteinWP_223847560.1
Context group ID
GCF_002259745::NZ_MWWW01000005.1::G00018Context members
BMYO_RS03515BMYO_RS03520
Partner locus tags
BMYO_RS03515BMYO_RS03520
Partner old locus tags
BMYO_0669BMYO_0670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223847560.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYO_RS03520Primary locus identifier stored in the genes table.
Old locus tagBMYO_0670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWWW01000005.1Sequence record reported by the local genomic context database.
Genomic interval176 299-177 480 nt1 182 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span175 575-177 480 ntGCF_002259745::NZ_MWWW01000005.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002259745::NZ_MWWW01000005.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWWW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span175 575-177 480 nt1 906 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 575 nt177 480 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYO_RS03515GCF_002259745#BMYO_RS03515
RRNarL
175 575-176 282 nt · Reverse (-)
BMYO_RS03520GCF_002259745#BMYO_RS03520
HKClassicCurrent focus
176 299-177 480 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001417815#BFAL_RS06745Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2504058
Simplified PFAM architecture for HKOC_2504058
PFAM domain coverage: 68 / 393 aa (17.3%)
1 aa393 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[171-238]
- Domain count: 1
- Matched identifier: HKOC_2504058
- Positioned domains: HisKA_3 171-238
Cluster members and taxonomy
Representative gene: GCF_001417815#BFAL_RS06745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_002259745
AssemblyASM225974v1 · Contigreference genome · haploid
Genome composition2 944 195 bp · 62,5% GCBifidobacterium myosotis
Signal transduction countsGenes 39 · HK 17 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key