1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:3e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYO_RS01570
Response regulator OmpR family
Bifidobacterium myosotis · GCF_002259745
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002259745#BMYO_RS01570Stable P2CS identifier used across views.
GenomeGCF_002259745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:2.32e-33:229:77:77- Raw architecture: Response_reg:4:3e-38:113:111:111#Trans_reg_C:153:2.32e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002259745::NZ_MWWW01000003.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51055-53537Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBMYO_0295RefSeq proteinWP_169834010.1
Context group ID
GCF_002259745::NZ_MWWW01000003.1::G00017Context members
BMYO_RS01570BMYO_RS01575
Partner locus tags
BMYO_RS01570BMYO_RS01575
Partner old locus tags
BMYO_0295BMYO_0296
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_169834010.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYO_RS01570Primary locus identifier stored in the genes table.
Old locus tagBMYO_0295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MWWW01000003.1Sequence record reported by the local genomic context database.
Genomic interval51 055-51 759 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 055-53 537 ntGCF_002259745::NZ_MWWW01000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002259745::NZ_MWWW01000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MWWW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span51 055-53 537 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 055 nt53 537 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYO_RS01570GCF_002259745#BMYO_RS01570
RROmpRCurrent focus
51 055-51 759 nt · Reverse (-)
BMYO_RS01575GCF_002259745#BMYO_RS01575
HKClassic
52 110-53 537 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS01570The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053523
Simplified PFAM architecture for RROC_1053523
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[158-228]
- Domain count: 2
- Matched identifier: RROC_1053523
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 158-228 ; Trans_reg_C 158-228
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS01570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_002259745
AssemblyASM225974v1 · Contigreference genome · haploid
Genome composition2 944 195 bp · 62,5% GCBifidobacterium myosotis
Signal transduction countsGenes 39 · HK 17 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key