1 Response_reg#1
4-115 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:4:1.44e-34:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGC51_RS02245
Response regulator OmpR family
Clostridioides difficile · GCF_002234355
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002234355#CGC51_RS02245Stable P2CS identifier used across views.
GenomeGCF_002234355Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:155:1.27e-35:229:75:77- Raw architecture: Response_reg:4:1.44e-34:115:113:111#Trans_reg_C:155:1.27e-35:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002234355::NZ_CP022524.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span399204-400830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGC51_02245RefSeq proteinWP_003434208.1
Context group ID
GCF_002234355::NZ_CP022524.1::G00002Context members
CGC51_RS02240CGC51_RS02245
Partner locus tags
CGC51_RS02240CGC51_RS02245
Partner old locus tags
CGC51_02240CGC51_02245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003434208.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3F4A2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3F4A2_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGC51_RS02245Primary locus identifier stored in the genes table.
Old locus tagCGC51_02245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP022524.1Sequence record reported by the local genomic context database.
Genomic interval400 129-400 830 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span399 204-400 830 ntGCF_002234355::NZ_CP022524.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002234355::NZ_CP022524.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP022524.1All displayed genes belong to this local TCS context.
Neighborhood span399 204-400 830 nt1 627 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
399 204 nt400 830 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGC51_RS02240GCF_002234355#CGC51_RS02240
HKClassic
399 204-400 127 nt · Reverse (-)
CGC51_RS02245GCF_002234355#CGC51_RS02245
RROmpRCurrent focus
400 129-400 830 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS16440Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081330
Simplified PFAM architecture for RROC_1081330
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1081330
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS16440
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 183 total members. Page 1 / 4.
GCF_000235905#HMPREF9945_RS16440 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002234355
AssemblyASM223435v1 · Complete Genomehaploid
Genome composition4 087 127 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key