1 Response_reg#1
4-113 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:4:1.54e-31:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A7683_RS00605
Response regulator LytTR family
Escherichia coli · GCF_002227375
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002227375#A7683_RS00605Stable P2CS identifier used across views.
GenomeGCF_002227375Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 239 aa (86.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
143-238 aa · 96 aa · 40.2% of protein
Raw token
LytTR:143:2.91e-31:238:99:98- Raw architecture: Response_reg:4:1.54e-31:113:113:111#LytTR:143:2.91e-31:238:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002227375::NZ_NLJT01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span131044-133445Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002227375::NZ_NLJT01000001.1::G00007Context members
A7683_RS00605A7683_RS00610
Partner locus tags
A7683_RS00605A7683_RS00610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000598641.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FR34Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FR34_ECOLXDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA7683_RS00605Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NLJT01000001.1Sequence record reported by the local genomic context database.
Genomic interval131 044-131 763 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span131 044-133 445 ntGCF_002227375::NZ_NLJT01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002227375::NZ_NLJT01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NLJT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span131 044-133 445 nt2 402 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 044 nt133 445 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A7683_RS00605GCF_002227375#A7683_RS00605
RRLytTRCurrent focus
131 044-131 763 nt · Reverse (-)
A7683_RS00610GCF_002227375#A7683_RS00610
HKClassic
131 760-133 445 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905275
Simplified PFAM architecture for RROC_0905275
PFAM domain coverage: 203 / 239 aa (84.9%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[144-237]
- Domain count: 2
- Matched identifier: RROC_0905275
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 144-237 ; LytTR 144-237
Cluster members and taxonomy
Representative gene: GCF_000005845#b2125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_002227375
AssemblyASM222737v1 · Contighaploid
Genome composition5 008 394 bp · 50,5% GCEscherichia coli
Signal transduction countsGenes 59 · HK 29 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key