1 Response_reg#1
6-114 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:6:7.37e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CER22_RS06415
Response regulator OmpR family
Bacillus sp. K2I17 · GCF_002209985
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002209985#CER22_RS06415Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:154:6.57e-34:231:78:77- Raw architecture: Response_reg:6:7.37e-35:114:110:111#Trans_reg_C:154:6.57e-34:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002209985::NZ_NJGF01000003.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span235648-238104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCER22_06415RefSeq proteinWP_088062417.1
Context group ID
GCF_002209985::NZ_NJGF01000003.1::G00013Context members
CER22_RS06415CER22_RS06420
Partner locus tags
CER22_RS06415CER22_RS06420
Partner old locus tags
CER22_06415CER22_06420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088062417.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCER22_RS06415Primary locus identifier stored in the genes table.
Old locus tagCER22_06415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJGF01000003.1Sequence record reported by the local genomic context database.
Genomic interval235 648-236 352 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span235 648-238 104 ntGCF_002209985::NZ_NJGF01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002209985::NZ_NJGF01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJGF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span235 648-238 104 nt2 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
235 648 nt238 104 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CER22_RS06415GCF_002209985#CER22_RS06415
RROmpRCurrent focus
235 648-236 352 nt · Forward (+)
CER22_RS06420GCF_002209985#CER22_RS06420
HKClassic
236 362-238 104 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002209985#CER22_RS06415The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053399
Simplified PFAM architecture for RROC_1053399
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1053399
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_002209985#CER22_RS06415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 014 743 · GCF_002209985
AssemblyASM220998v1 · Scaffoldhaploid
Genome composition6 112 111 bp · 35,0% GCBacillus sp. K2I17
Signal transduction countsGenes 115 · HK 62 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key