1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:4.97e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CEU98_RS26845
Response regulator OmpR family
Bacillus mycoides · GCF_002200135
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002200135#CEU98_RS26845Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:154:9.14e-36:229:76:77- Raw architecture: Response_reg:6:4.97e-35:115:111:111#Trans_reg_C:154:9.14e-36:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002200135::NZ_NIZC01000040.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13088-15278Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002200135::NZ_NIZC01000040.1::G00050Context members
CEU98_RS26845CEU98_RS26850
Partner locus tags
CEU98_RS26845CEU98_RS26850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002187503.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7W414Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7W414_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCEU98_RS26845Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NIZC01000040.1Sequence record reported by the local genomic context database.
Genomic interval13 088-13 789 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 088-15 278 ntGCF_002200135::NZ_NIZC01000040.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002200135::NZ_NIZC01000040.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIZC01000040.1All displayed genes belong to this local TCS context.
Neighborhood span13 088-15 278 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 088 nt15 278 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CEU98_RS26845GCF_002200135#CEU98_RS26845
RROmpRCurrent focus
13 088-13 789 nt · Forward (+)
CEU98_RS26850GCF_002200135#CEU98_RS26850
HKClassic
13 773-15 278 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS26995Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081717
Simplified PFAM architecture for RROC_1081717
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1081717
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS26995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002200135
AssemblyASM220013v1 · Scaffoldhaploid
Genome composition5 635 141 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key