1 HisKA#1
205-269 aa · 65 aa · 15.4% of protein
Raw token
HisKA:205:1.47e-16:269:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CEV00_RS00585
Histidine kinase, Classic
Bacillus mycoides · GCF_002200025
ClassHKTypeClassicLength423 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002200025#CEV00_RS00585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 423 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-412 aa · 104 aa · 24.6% of protein
Raw token
HATPase_c:309:1.16e-22:412:107:109- Raw architecture: HisKA:205:1.47e-16:269:65:64#HATPase_c:309:1.16e-22:412:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002200025::NZ_NIUO01000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span121262-122533Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002200025::NZ_NIUO01000001.1::G00002Context members
CEV00_RS00585
Partner locus tags
CEV00_RS00585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_085963333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCEV00_RS00585Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NIUO01000001.1Sequence record reported by the local genomic context database.
Genomic interval121 262-122 533 nt1 272 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span121 262-122 533 ntGCF_002200025::NZ_NIUO01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002200025::NZ_NIUO01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIUO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span121 262-122 533 nt1 272 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 262 nt122 533 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CEV00_RS00585GCF_002200025#CEV00_RS00585
HKClassicCurrent focus
121 262-122 533 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002569385#COL41_RS27005Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2084155
Simplified PFAM architecture for HKOC_2084155
PFAM domain coverage: 323 / 439 aa (73.6%)
1 aa439 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[39-194] | HisKA[221-283] | HATPase_c[326-429]
- Domain count: 3
- Matched identifier: HKOC_2084155
- Positioned domains: 5TM-5TMR_LYT 39-194 ; HisKA 221-283 ; HATPase_c 326-429
Cluster members and taxonomy
Representative gene: GCF_002569385#COL41_RS27005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002200025
AssemblyASM220002v1 · Contighaploid
Genome composition5 233 832 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key