1 HAMP#1
292-359 aa · 68 aa · 11.4% of protein
Raw token
HAMP:292:0.0000000000000471:359:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B6F67_RS24095
Histidine kinase, Classic
Bacillus cereus · GCF_002196815
ClassHKTypeClassicLength598 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002196815#B6F67_RS24095Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length598 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 598 aa (40.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa598 aa
Domain-by-domain annotation3 items
2 HisKA#2
379-443 aa · 65 aa · 10.9% of protein
Raw token
HisKA:379:0.00000000000000219:443:65:643 HATPase_c#3
487-597 aa · 111 aa · 18.6% of protein
Raw token
HATPase_c:487:5.23e-23:597:112:109- Raw architecture: HAMP:292:0.0000000000000471:359:68:69#HisKA:379:0.00000000000000219:443:65:64#HATPase_c:487:5.23e-23:597:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002196815::NZ_NBBB01000019.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15412-17894Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002196815::NZ_NBBB01000019.1::G00025Context members
B6F67_RS24095B6F67_RS24100
Partner locus tags
B6F67_RS24095B6F67_RS24100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088232865.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB6F67_RS24095Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NBBB01000019.1Sequence record reported by the local genomic context database.
Genomic interval15 412-17 208 nt1 797 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 412-17 894 ntGCF_002196815::NZ_NBBB01000019.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002196815::NZ_NBBB01000019.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NBBB01000019.1All displayed genes belong to this local TCS context.
Neighborhood span15 412-17 894 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 412 nt17 894 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B6F67_RS24095GCF_002196815#B6F67_RS24095
HKClassicCurrent focus
15 412-17 208 nt · Reverse (-)
B6F67_RS24100GCF_002196815#B6F67_RS24100
RROmpR
17 205-17 894 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002196815#B6F67_RS24095The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1063010
Simplified PFAM architecture for HKOC_1063010
PFAM domain coverage: 224 / 598 aa (37.5%)
1 aa598 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[310-359] | HisKA[379-443] | HATPase_c[489-597]
- Domain count: 3
- Matched identifier: HKOC_1063010
- Positioned domains: HAMP 310-359 ; HisKA 379-443 ; HATPase_c 489-597
Cluster members and taxonomy
Representative gene: GCF_002196815#B6F67_RS24095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002196815
AssemblyASM219681v1 · Scaffoldhaploid
Genome composition5 269 088 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 100 · HK 55 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key