1 HAMP#1
174-243 aa · 70 aa · 14.5% of protein
Raw token
HAMP:174:7.34e-17:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B6F67_RS20180
Histidine kinase, Classic
Bacillus cereus · GCF_002196815
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002196815#B6F67_RS20180Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 484 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:6.61e-16:319:65:643 HATPase_c#3
367-480 aa · 114 aa · 23.6% of protein
Raw token
HATPase_c:367:4.55e-31:480:114:109- Raw architecture: HAMP:174:7.34e-17:243:70:69#HisKA:255:6.61e-16:319:65:64#HATPase_c:367:4.55e-31:480:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002196815::NZ_NBBB01000013.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46331-48476Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002196815::NZ_NBBB01000013.1::G00016Context members
B6F67_RS20175B6F67_RS20180
Partner locus tags
B6F67_RS20175B6F67_RS20180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088232236.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB6F67_RS20180Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NBBB01000013.1Sequence record reported by the local genomic context database.
Genomic interval47 022-48 476 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 331-48 476 ntGCF_002196815::NZ_NBBB01000013.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002196815::NZ_NBBB01000013.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NBBB01000013.1All displayed genes belong to this local TCS context.
Neighborhood span46 331-48 476 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 331 nt48 476 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B6F67_RS20175GCF_002196815#B6F67_RS20175
RROmpR
46 331-47 020 nt · Reverse (-)
B6F67_RS20180GCF_002196815#B6F67_RS20180
HKClassicCurrent focus
47 022-48 476 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002196815#B6F67_RS20180The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1585981
Simplified PFAM architecture for HKOC_1585981
PFAM domain coverage: 226 / 484 aa (46.7%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[255-319] | HATPase_c[370-478]
- Domain count: 3
- Matched identifier: HKOC_1585981
- Positioned domains: HAMP 191-242 ; HisKA 255-319 ; HATPase_c 370-478
Cluster members and taxonomy
Representative gene: GCF_002196815#B6F67_RS20180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002196815
AssemblyASM219681v1 · Scaffoldhaploid
Genome composition5 269 088 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 100 · HK 55 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key