1 GAF#1
26-167 aa · 142 aa · 38.2% of protein
Raw token
GAF:26:0.000000000645:167:144:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B6F67_RS07615
Histidine kinase, Classic
Bacillus cereus · GCF_002196815
ClassHKTypeClassicLength372 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002196815#B6F67_RS07615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 372 aa (81.2%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
184-249 aa · 66 aa · 17.7% of protein
Raw token
HisKA_3:184:1.18e-16:249:68:683 HATPase_c#3
279-372 aa · 94 aa · 25.3% of protein
Raw token
HATPase_c:279:5.77e-16:372:109:109- Raw architecture: GAF:26:0.000000000645:167:144:133#HisKA_3:184:1.18e-16:249:68:68#HATPase_c:279:5.77e-16:372:109:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002196815::NZ_NBBB01000003.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84675-86444Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002196815::NZ_NBBB01000003.1::G00037Context members
B6F67_RS07610B6F67_RS07615
Partner locus tags
B6F67_RS07610B6F67_RS07615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088230366.1Primary protein accession used for annex mappings.
UniProt accessionA0A2C1M1E6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2C1M1E6_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB6F67_RS07615Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NBBB01000003.1Sequence record reported by the local genomic context database.
Genomic interval85 326-86 444 nt1 119 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 675-86 444 ntGCF_002196815::NZ_NBBB01000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002196815::NZ_NBBB01000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NBBB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span84 675-86 444 nt1 770 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 675 nt86 444 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B6F67_RS07610GCF_002196815#B6F67_RS07610
RRNarL
84 675-85 310 nt · Reverse (-)
B6F67_RS07615GCF_002196815#B6F67_RS07615
HKClassicCurrent focus
85 326-86 444 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002196815#B6F67_RS07615The current gene is the representative for this cluster.
PFAM architectureGAF_2 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2671173
Simplified PFAM architecture for HKOC_2671173
PFAM domain coverage: 297 / 372 aa (79.8%)
1 aa372 aa
GAF_2HisKA_3HATPase_c
- Simplified architecture: GAF_2 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[24-168] | HisKA_3[184-248] | HATPase_c[285-371]
- Domain count: 3
- Matched identifier: HKOC_2671173
- Positioned domains: GAF_2 24-168 ; HisKA_3 184-248 ; HATPase_c 285-371
Cluster members and taxonomy
Representative gene: GCF_002196815#B6F67_RS07615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002196815
AssemblyASM219681v1 · Scaffoldhaploid
Genome composition5 269 088 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 100 · HK 55 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key